2025

• Li, Lu, Ladd, Matveev, Shea-Brown, Steinmetz
  "Global and local origins of trial-to-trial spike count variability in visual cortex"
  bioRxiv [Preprint]
   
• Lakunina, Socha, Ladd, Bowen, ..., Li, ..., Ye, ..., Steinmetz, Svoboda, Siegle, Carandini
  "Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics"
  bioRxiv [Preprint]
   
• Lee, Gül, Heller, Lakunina, Yu, Shelton, Olsen, Steinmetz, Hurwitz, Jaramillo, Przytycki, Chandrasekaran
  "A multimodal approach for visualization and identification of electrophysiological cell types in vivo"
  bioRxiv [Preprint]
   
• Ye*, Shelton*, Shaker, Boussard, Colonell, ..., Mora Lopez, Dutta, Paninski, Siegle, Koch, Olsen, Harris, Steinmetz
  "Ultra-high density electrodes improve detection, yield, and cell type specificity of brain recordings"
  Neuron (in press)
   
• Findling, Hubert, The International Brain Laboratory, ..., Birman, Roth, Steinmetz, et al.
  "Brain-wide representations of prior information in mouse decision-making"
  Nature
   
• The International Brain Laboratory, ..., Birman, Roth, Steinmetz, et al.
  "A brain-wide map of neural activity during complex behaviour"
  Nature
   
• Yu, Lyu, Xu, Windolf, Lee, Yang, Shelton, Olsen, Minavi, Winter, International Brain Laboratory, Dyer, Chandrasekaran, Steinmetz, Paninski, Hurwitz
  "In vivo cell-type and brain region classification via multimodal contrastive learning"
  bioRxiv [Preprint]
   
• Windolf, ..., Ye, Shaker, Steinmetz, ..., Paninski, Varol
  "DREDge: robust motion correction for high-density extracellular recordings across species"
  Nature Methods
   
• The International Brain Laboratory, ..., Churchland^, Paninski^, Steinmetz^, et al.
  "Reproducibility of in-vivo electrophysiological measurements in mice"
  eLife
   

2024

• Matveev, Li, Ye, Bowen, Opitz-Araya, Ting, Steinmetz
  "Simultaneous mesoscopic measurement and manipulation of mouse cortical activity"
  bioRxiv [Preprint]
   
• Birman, Chapuis, Faulkner, Rossant, the International Brain Laboratory, ..., Steinmetz, Urai, Wells, West, Winter
  "Interactive data exploration websites for large-scale electrophysiology"
  bioRxiv [Preprint]
   
• Lewis, Suarez, Rigolli, Franks, Steinmetz, Gire
  "The spiking output of the mouse olfactory bulb encodes large-scale temporal features of natural odor environments"
  bioRxiv [Preprint]
   
• Deveau, Zhou, LaFosse, Deng, Mirbagheri, Steinmetz, Histed
  "Active filtering of sequences of neural activity by recurrent circuits of sensory cortex"
  bioRxiv [Preprint]
   
• Chandrasekaran, Vermani, Gupta, Steinmetz, Moore, Sridharan
  "Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex"
  Science Advances
   
• Song, Shin, Seo, Soltani, Steinmetz, Lee, Jung, Paik
  "Hierarchical gradient of timescales in the mammalian forebrain"
  PNAS
   
• Zhang, He, Boussard, Windolf, Winter, Trautmann, Roth, Barrell, Churchland, Steinmetz, IBL, Varol, Hurwitz, Paninski
  "Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes"
  NeurIPS
   

2023

• Ye, Bull, Li, Birman, Daigle, Tasic, Zeng, Steinmetz
  "Brain-wide topographic coordination of traveling spiral waves"
  bioRxiv [Preprint]
   
• Birman, Yang, West, Karsh, Browning, The International Brain Laboratory, Siegle, Steinmetz
  "Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment"
  eLife [Reviewed Preprint]
   
• Ottenheimer*, Hjort*, Bowen*, Steinmetz^, Stuber^
  "A stable, distributed code for cue value in mouse cortex during reward learning"
  eLife
   
• Zeraati, Shi, Steinmetz, Gieselmann, Thiele, Moore, Levina, Engel
  "Intrinsic timescales in the visual cortex change with selective attention and reflect spatial connectivity"
  Nature Communications
   
• The International Brain Laboratory, ..., Steinmetz, et al.
  "Data architecture for a large-scale neuroscience collaboration"
  Nature Methods
   

2022

• Recanatesi, Bradde, Balasubramaniam^, Steinmetz^, Shea-Brown^
  "A scale-dependent measure of system dimensionality"
  Patterns
   
• Zagha, Ehrlich, Lee, Lur, O'Connor, Steinmetz, Stringer, Yang
  "The importance of accounting for movement when relating neuronal activity to sensory and cognitive processes"
  Journal of Neuroscience [Review]
   
• Shi, Steinmetz, Moore, Boahen, Engel
  "Cortical state dynamics and selective attention define the spatial pattern of correlated variability in neocortex"
  Nature Communications
   
• 't Hart', ..., Steinmetz, et al.
  "Neuromatch Academy: a 3-week, online summer school in computational neuroscience"
  J. of Open Science Education
   

2021

• Steinmetz*, Aydin*, Lebedeva*, Okun*, Pachitariu*, et al.
  "Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings" // [PDF]
  Science
   
• Zatka-Haas*, Steinmetz*, Carandini, Harris
  "Sensory coding and the causal impact of mouse cortex in a visual decision" // [PDF]
  eLife
   
• Peters, Fabre, Steinmetz, Harris, Carandini
  "Striatal activity topographically reflects cortical activity" // [PDF]
  Nature
   
• Van Kempen, Gieselmann, Boyd, Steinmetz, Moore, Engel, Thiele
  "Top-down coordination of local cortical state during selective attention"
  Neuron
   
• Petersen, Siegle, Steinmetz, Mahallati, Buzsáki
  "CellExplorer: A framework for visualizing and characterizing single neurons"
  Neuron
   
• Benjamin, Steinmetz, Oza, Aguayo, Boahen
  "Neurogrid simulates cortical cell-types, active dendrites, and top-down attention"
  Neuromorphic Comp. and Eng.
   
• Linden, Tabuena, Steinmetz, Moody, Brunton S, Brunton B
  "Go with the FLOW: Visualizing spatiotemporal dynamics in optical widefield calcium imaging"
  J. of the Royal Society Interface
   

2020

• Schroeder, Steinmetz, Krumin, Pachitariu, Rizzi, Lagnado, Harris, Carandini
  "Arousal modulates retinal output" // [PDF]
  Neuron
   
• Jacobs, Steinmetz, Peters, Carandini, Harris
  "Cortical state fluctuations during sensory decision making"
  Current Biology
   
• Dimitriadis, Neto, ..., Steinmetz, et al.
  "Why not record from every electrode with a CMOS scanning probe?"
  bioRxiv [Preprint]
   

2019

• Steinmetz, Zatka-Haas, Carandini, Harris
  "Distributed coding of choice, action, and engagement across the mouse brain" // [PDF]
  Nature
   
• Stringer*, Pachitariu*, Steinmetz, Carandini, Harris
  "High-dimensional geometry of population responses in visual cortex" // [PDF]
  Nature
   
• Stringer*, Pachitariu*, Steinmetz, Reddy, Carandini, Harris
  "Spontaneous behaviors drive multidimensional, brain-wide population activity" // [PDF]
  Science
   
• Engel, Steinmetz
  "New perspectives on dimensionality and variability from large-scale cortical dynamics" // [PDF]
  Current Opinion in Neurobiology [Review]
   
• Shimaoka, Steinmetz, Harris, Carandini
  "The impact of bilateral ongoing activity on evoked responses in mouse cortex" // [PDF]
  eLife
   
• Okun, Steinmetz, Lak, Dervinis, Harris
  "Distinct structure of cortical population activity on fast and infraslow timescales" // [PDF]
  Cerebral Cortex
   
• Pettine, Steinmetz, Moore
  "Laminar Segregation of Sensory Coding and Behavioral Readout in Macaque V4" // [PDF]
  PNAS
   

2018

• Steinmetz, Koch, Harris, Carandini
  "Challenges and opportunities for large-scale electrophysiology with Neuropixels probes" // [PDF]
  Current Opinion in Neurobiology [Review]
   
• Shamash, Carandini, Harris, Steinmetz
  "A tool for analyzing electrode tracks from slice histology"
  bioRxiv [Preprint]
   

2017

• Jun*, Steinmetz*, Siegle*, Denman*, Bauza*, Barbarits*, Lee*, ..., Harris
  "Fully Integrated Silicon Probes for High-Density Recording of Neural Activity" // [PDF]
  Nature
   
• Burgess*, Lak*, Steinmetz*, Zatka-Haas*, et al.
  "High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice" // [PDF]
  Cell Reports
   
• Steinmetz, Buetfering, Lecoq, Lee, et al.
  "Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines" // [PDF]
  eNeuro
   
• Sridharan, Steinmetz, Moore, Knudsen
  "Does the Superior Colliculus Control Perceptual Sensitivity or Choice Bias during Attention? Evidence from a Multialternative Decision Framework" // [PDF]
  Journal of Neuroscience
   

2016

• Engel*, Steinmetz*, Gieselmann, Thiele, Moore, Boahen
  "Selective modulation of cortical state during spatial attention" // [PDF]
  Science
   
• Stringer, Pachitariu, Steinmetz, Okun, Bartho, Harris, Sahani, Lesica
  "Inhibitory control of correlated intrinsic variability in cortical networks" // [PDF]
  eLife
   
• Pachitariu, Steinmetz, Kadir, Carandini, Harris
  "Fast and accurate spike sorting of high-channel count probes with KiloSort" // [PDF]
  NeurIPS
   

2015

• Okun, Steinmetz, ..., Carandini, Harris
  "Diverse coupling of neurons to populations in sensory cortex" // [PDF]
  Nature
   

2014

• Sridharan, Steinmetz, Moore, Knudsen
  "Distinguishing bias from sensitivity effects in multialternative detection tasks" // [PDF]
  Journal of Vision
   
• Steinmetz, Moore
  "Eye Movement Preparation Modulates Neuronal Responses in Area V4 When Dissociated from Attentional Demands" // [PDF]
  Neuron
   
• Steinmetz
  "Circuits underlying visual attention in primate neocortex" // [PDF]
  Ph.D. Thesis, Stanford University
   
• Zirnsak, Steinmetz, Noudoost, Xu, Moore
  "Visual space is compressed in prefrontal cortex before eye movements" // [PDF]
  Nature
   

2012

• Squire*, Steinmetz*, Moore
  "Frontal Eye Fields"
  Scholarpedia [Review]
   
• Steinmetz, Moore
  "Lumping and splitting the neural circuitry of visual attention" // [PDF]
  Neuron [Commentary]
   

2010

• Steinmetz, Moore
  "Changes in the Response Rate and Response Variability of Area V4 Neurons During the Preparation of Saccadic Eye Movements" // [PDF]
  Journal of Neurophysiology
   
• Noudoost, Chang, Steinmetz, Moore
  "Top-down control of visual attention" // [PDF]
  Current Opinion in Neurobiology [Review]
   

2009

• Aton, Seibt, Dumoulin, Jha, Steinmetz, Coleman, Naidoo, Frank
  "Mechanisms of Sleep-Dependent Consolidation of Cortical Plasticity" // [PDF]
  Neuron
   

2008

• Liu, Steinmetz, Farley, Smith, Joseph
  "Mid-fusiform activation during object discrimination reflects the process of differentiating structural descriptions" // [PDF]
  Journal of Cognitive Neuroscience
   

2006

• Joseph, Cerullo, Farley, Steinmetz, Mier
  "fMRI correlates of cortical specialization and generalization for letter processing" // [PDF]
  Neuroimage
   
• Joseph, Powell, Andersen, ..., Steinmetz, Zhang
  "fMRI in alert, behaving monkeys: an adaptation of the human infant familiarization novelty preference procedure" // [PDF]
  Journal of Neuroscience Methods
   

2005

• Jha, Jones, Coleman, Steinmetz, ..., Frank
  "Sleep-Dependent Plasticity Requires Cortical Activity" // [PDF]
  Journal of Neuroscience