• Datasets recorded with Neuropixels probes.
• Kilosort2, a tool for faster and more accurate spike sorting, designed for very large datasets. Developed primarily by Marius Pachitariu.
• Phy, a graphical user interface for manual-stage spike sorting, also designed for very large datasets. Developed primarily by Cyrille Rossant.
• Spikes, code for performing many basic analyses of spike trains in Matlab.
• sortingQuality, code for assessing the quality of spike-sorted neurons.
• Widefield, code and GUIs for analyzing widefield calcium imaging data in Matlab.
• allenCCF, code and GUIs for browsing and working with the Allen Institute's Common Coordinate Framework atlas in Matlab.
• Alyx, a database framework for management of experimental subjects and associated datasets, in PostgreSQL. Developed with Cyrille Rossant, Max Hunter, and Kenneth Harris. Associated code for working with the database from Matlab.
• Wiki and user forum for practical details of using Neuropixels probes. See also our training course on the use of Neuropixels probes.
• Wheel task: hardware designs and software for deploying this task, developed by the Carandini/Harris lab.